single cell combinatorial indexing assay for transposase-accessessable chromatin using sequencing (Assay Type)

Synonyms:sciATACseq

Description:An assay for transposase-accessible chromatin that uses sequencing which involves single cell combinatorial indexing ('sci-') strategy where nucleic acids from each of many cells are uniquely tagged through several rounds of split-pool barcoding which enables identification of single cells without single cell isolation.

Results found

Linked to

	Label	Description
	4DNFIRZCIP6H.fastq.gz File (Entity type)	A 210 MB file from 4DN produced from OBI:0003104 as part of the fcc7f634 9252 499f b79c 380795af2ddd project
	4DNFI3XCABWA.fastq.gz File (Entity type)	A 348 MB file from 4DN produced from OBI:0003104 as part of the fcc7f634 9252 499f b79c 380795af2ddd project
	4DNFICX2I184.fastq.gz File (Entity type)	A 228 MB file from 4DN produced from OBI:0003104 as part of the fcc7f634 9252 499f b79c 380795af2ddd project
	4DNFI87X4FRN.fastq.gz File (Entity type)	A 335 MB file from 4DN produced from OBI:0003104 as part of the fcc7f634 9252 499f b79c 380795af2ddd project
	4DNFIASEMP76.fastq.gz File (Entity type)	A 1.86 GB file from 4DN produced from OBI:0003104 as part of the fcc7f634 9252 499f b79c 380795af2ddd project
	4DNFIBUMQ47F.fastq.gz File (Entity type)	A 1.99 GB file from 4DN produced from OBI:0003104 as part of the fcc7f634 9252 499f b79c 380795af2ddd project
	4DNFIW8T1BRD.fastq.gz File (Entity type)	A 534 MB file from 4DN produced from OBI:0003104 as part of the fcc7f634 9252 499f b79c 380795af2ddd project
	4DNFIHPWGPDU.fastq.gz File (Entity type)	A 284 MB file from 4DN produced from OBI:0003104 as part of the fcc7f634 9252 499f b79c 380795af2ddd project
	4DNFIUILMYPA.fastq.gz File (Entity type)	A 149 MB file from 4DN produced from OBI:0003104 as part of the fcc7f634 9252 499f b79c 380795af2ddd project
	4DNFIDS8GTWG.fastq.gz File (Entity type)	A 362 MB file from 4DN produced from OBI:0003104 as part of the fcc7f634 9252 499f b79c 380795af2ddd project

4DNFIRZCIP6H.fastq.gz

File (Entity type)

A 210 MB file from 4DN produced from OBI:0003104 as part of the fcc7f634 9252 499f b79c 380795af2ddd project

4DNFI3XCABWA.fastq.gz

File (Entity type)

A 348 MB file from 4DN produced from OBI:0003104 as part of the fcc7f634 9252 499f b79c 380795af2ddd project

4DNFICX2I184.fastq.gz

File (Entity type)

A 228 MB file from 4DN produced from OBI:0003104 as part of the fcc7f634 9252 499f b79c 380795af2ddd project

4DNFI87X4FRN.fastq.gz

File (Entity type)

A 335 MB file from 4DN produced from OBI:0003104 as part of the fcc7f634 9252 499f b79c 380795af2ddd project

4DNFIASEMP76.fastq.gz

File (Entity type)

A 1.86 GB file from 4DN produced from OBI:0003104 as part of the fcc7f634 9252 499f b79c 380795af2ddd project

4DNFIBUMQ47F.fastq.gz

File (Entity type)

A 1.99 GB file from 4DN produced from OBI:0003104 as part of the fcc7f634 9252 499f b79c 380795af2ddd project

4DNFIW8T1BRD.fastq.gz

File (Entity type)

A 534 MB file from 4DN produced from OBI:0003104 as part of the fcc7f634 9252 499f b79c 380795af2ddd project

4DNFIHPWGPDU.fastq.gz

File (Entity type)

A 284 MB file from 4DN produced from OBI:0003104 as part of the fcc7f634 9252 499f b79c 380795af2ddd project

4DNFIUILMYPA.fastq.gz

File (Entity type)

A 149 MB file from 4DN produced from OBI:0003104 as part of the fcc7f634 9252 499f b79c 380795af2ddd project

4DNFIDS8GTWG.fastq.gz

File (Entity type)

A 362 MB file from 4DN produced from OBI:0003104 as part of the fcc7f634 9252 499f b79c 380795af2ddd project

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.