DataKnowledgeCloudtrainingcoordination

EXR-DERLE1UCSF136-BS (Biosample)

Subject:

EXR-DERLE1SASP11-DO

Subject (Entity type)

Sample Prep Method:

sample preparation for sequencing assay

Sample Prep Method (Entity type)

Project:

EXR-DERLE1PHASE1PROT-ST

Project (Entity type)

Dcc Asset:

exRNA CFDE 102025.zip

Processed File (Entity type)

Dcc:

ExRNA

DCC (Entity type)

Collection:

EXR-DERLE1PHASE1PROT-AN

Collection (Entity type)

Biofluid:

sputum

Biofluid (Entity type)

Anatomy:

submandibular gland

Anatomy (Entity type)

Creation Time:2017-08-02T00:00:00

Results found

Linked to

	Label	Description
	endogenousAlignments genomeMapped transcriptome Aligned.out.sorted.bam.coverage.txt File (Entity type)	A file from ExRNA produced from OBI:0002112 as part of the EXR DERLE1PHASE1PROT ST project
	filteringAlignments rRNA Aligned.bedgraph.xz File (Entity type)	A file from ExRNA produced from OBI:0002112 as part of the EXR DERLE1PHASE1PROT ST project
	readCounts miRNAprecursor sense.txt File (Entity type)	A file from ExRNA produced from OBI:0002112 as part of the EXR DERLE1PHASE1PROT ST project
	endogenousAlignments genome Aligned.bedgraph.xz File (Entity type)	A file from ExRNA produced from OBI:0002112 as part of the EXR DERLE1PHASE1PROT ST project
	ExogenousRibosomalAlignments.result.taxaAnnotated.txt File (Entity type)	A file from ExRNA produced from OBI:0002112 as part of the EXR DERLE1PHASE1PROT ST project
	endogenousAlignments genome Aligned.bedgraph.intersect RBP all combined.bed.xz File (Entity type)	A file from ExRNA produced from OBI:0002112 as part of the EXR DERLE1PHASE1PROT ST project
	readCounts gencode sense geneLevel.txt File (Entity type)	A file from ExRNA produced from OBI:0002112 as part of the EXR DERLE1PHASE1PROT ST project
	readCounts gencode sense.txt File (Entity type)	A file from ExRNA produced from OBI:0002112 as part of the EXR DERLE1PHASE1PROT ST project
	readCounts miRNAmature sense.txt File (Entity type)	A file from ExRNA produced from OBI:0002112 as part of the EXR DERLE1PHASE1PROT ST project
	readCounts piRNA antisense.txt File (Entity type)	A file from ExRNA produced from OBI:0002112 as part of the EXR DERLE1PHASE1PROT ST project

File

endogenousAlignments genomeMapped transcriptome Aligned.out.sorted.bam.coverage.txt

File (Entity type)

A file from ExRNA produced from OBI:0002112 as part of the EXR DERLE1PHASE1PROT ST project

File

filteringAlignments rRNA Aligned.bedgraph.xz

File (Entity type)

A file from ExRNA produced from OBI:0002112 as part of the EXR DERLE1PHASE1PROT ST project

File

readCounts miRNAprecursor sense.txt

File (Entity type)

A file from ExRNA produced from OBI:0002112 as part of the EXR DERLE1PHASE1PROT ST project

File

endogenousAlignments genome Aligned.bedgraph.xz

File (Entity type)

A file from ExRNA produced from OBI:0002112 as part of the EXR DERLE1PHASE1PROT ST project

File

ExogenousRibosomalAlignments.result.taxaAnnotated.txt

File (Entity type)

A file from ExRNA produced from OBI:0002112 as part of the EXR DERLE1PHASE1PROT ST project

File

endogenousAlignments genome Aligned.bedgraph.intersect RBP all combined.bed.xz

File (Entity type)

A file from ExRNA produced from OBI:0002112 as part of the EXR DERLE1PHASE1PROT ST project

File

readCounts gencode sense geneLevel.txt

File (Entity type)

A file from ExRNA produced from OBI:0002112 as part of the EXR DERLE1PHASE1PROT ST project

File

readCounts gencode sense.txt

File (Entity type)

A file from ExRNA produced from OBI:0002112 as part of the EXR DERLE1PHASE1PROT ST project

File

readCounts miRNAmature sense.txt

File (Entity type)

A file from ExRNA produced from OBI:0002112 as part of the EXR DERLE1PHASE1PROT ST project

File

readCounts piRNA antisense.txt

File (Entity type)

A file from ExRNA produced from OBI:0002112 as part of the EXR DERLE1PHASE1PROT ST project

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Consortium

Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.