GSE57871 GLI1 PSMD13 knockdown HCT 116 Vorinostat 11 v 10 human dn (Gene Set)

Dcc Asset:

rummageo gene perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_11_v_10_human_dn.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_11_v_10_human_dn.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_11_v_10_human_dn.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_11_v_10_human_dn.

Results found

Linked to

	Label	Description
	BAIAP2-DT Gene (Entity type)	ENSG00000226137 - BAIAP2 divergent transcript
	DUBR Gene (Entity type)	ENSG00000243701 - DPPA2 upstream binding RNA
	DUS4L-BCAP29 Gene (Entity type)	ENSG00000288558 - DUS4L-BCAP29 readthrough
	MIR210HG Gene (Entity type)	ENSG00000247095 - MIR210 host gene
	PCAT7 Gene (Entity type)	ENSG00000231806 - prostate cancer associated transcript 7
	C6orf47 Gene (Entity type)	ENSG00000204439 - chromosome 6 open reading frame 47
	LOC100996660 Gene (Entity type)	ENSG00000267248 - uncharacterized LOC100996660
	CYKILR Gene (Entity type)	ENSG00000267053 - cyclin dependent kinase inhibitor 2A regulated lncRNA
	IL12A-AS1 Gene (Entity type)	ENSG00000244040 - IL12A antisense RNA 1
	GRID1-AS2 Gene (Entity type)	ENSG00000270002 - GRID1 antisense RNA 2

BAIAP2-DT

Gene (Entity type)

ENSG00000226137 - BAIAP2 divergent transcript

DUBR

Gene (Entity type)

ENSG00000243701 - DPPA2 upstream binding RNA

DUS4L-BCAP29

Gene (Entity type)

ENSG00000288558 - DUS4L-BCAP29 readthrough

MIR210HG

Gene (Entity type)

ENSG00000247095 - MIR210 host gene

PCAT7

Gene (Entity type)

ENSG00000231806 - prostate cancer associated transcript 7

C6orf47

Gene (Entity type)

ENSG00000204439 - chromosome 6 open reading frame 47

LOC100996660

Gene (Entity type)

ENSG00000267248 - uncharacterized LOC100996660

CYKILR

Gene (Entity type)

ENSG00000267053 - cyclin dependent kinase inhibitor 2A regulated lncRNA

IL12A-AS1

Gene (Entity type)

ENSG00000244040 - IL12A antisense RNA 1

GRID1-AS2

Gene (Entity type)

ENSG00000270002 - GRID1 antisense RNA 2

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.