GSE230372 KDM4A knockdown CAL-27 LEF1 1 v 0 human dn (Gene Set)

Dcc Asset:

rummageo gene perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE230372_KDM4A knockdown_CAL-27_LEF1_1_v_0_human_dn.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE230372_KDM4A knockdown_CAL-27_LEF1_1_v_0_human_dn.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE230372_KDM4A knockdown_CAL-27_LEF1_1_v_0_human_dn.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE230372_KDM4A knockdown_CAL-27_LEF1_1_v_0_human_dn.

Results found

Linked to

	Label	Description
	DDX52 Gene (Entity type)	ENSG00000278053 - DExD-box helicase 52
	LINC00665 Gene (Entity type)	ENSG00000232677 - long intergenic non-protein coding RNA 665
	CASTOR3P Gene (Entity type)	ENSG00000291122 - CASTOR family member 3, pseudogene
	UCA1 Gene (Entity type)	ENSG00000214049 - urothelial cancer associated 1
	PRR34-AS1 Gene (Entity type)	ENSG00000197182 - PRR34 antisense RNA 1
	LINC02381 Gene (Entity type)	ENSG00000250742 - long intergenic non-protein coding RNA 2381
	GUSBP11 Gene (Entity type)	ENSG00000228315 - GUSB pseudogene 11
	LINC02210 Gene (Entity type)	ENSG00000293460 - long intergenic non-protein coding RNA 2210
	THUMPD3-AS1 Gene (Entity type)	ENSG00000206573 - THUMPD3 antisense RNA 1
	AFG3L1P Gene (Entity type)	ENSG00000293510 - AFG3 like matrix AAA peptidase subunit 1, pseudogene

DDX52

Gene (Entity type)

ENSG00000278053 - DExD-box helicase 52

LINC00665

Gene (Entity type)

ENSG00000232677 - long intergenic non-protein coding RNA 665

CASTOR3P

Gene (Entity type)

ENSG00000291122 - CASTOR family member 3, pseudogene

UCA1

Gene (Entity type)

ENSG00000214049 - urothelial cancer associated 1

PRR34-AS1

Gene (Entity type)

ENSG00000197182 - PRR34 antisense RNA 1

LINC02381

Gene (Entity type)

ENSG00000250742 - long intergenic non-protein coding RNA 2381

GUSBP11

Gene (Entity type)

ENSG00000228315 - GUSB pseudogene 11

LINC02210

Gene (Entity type)

ENSG00000293460 - long intergenic non-protein coding RNA 2210

THUMPD3-AS1

Gene (Entity type)

ENSG00000206573 - THUMPD3 antisense RNA 1

AFG3L1P

Gene (Entity type)

ENSG00000293510 - AFG3 like matrix AAA peptidase subunit 1, pseudogene

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The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

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Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.