GSE57871 GLI1 PSMD13 knockdown HCT 116 Vorinostat 11 v 12 human dn (Gene Set)

Dcc Asset:

rummageo gene perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_11_v_12_human_dn.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_11_v_12_human_dn.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_11_v_12_human_dn.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_11_v_12_human_dn.

Results found

Linked to

	Label	Description
	MRPS18B Gene (Entity type)	ENSG00000204568 - mitochondrial ribosomal protein S18B
	DANCR Gene (Entity type)	ENSG00000226950 - differentiation antagonizing non-protein coding RNA
	PVT1 Gene (Entity type)	ENSG00000249859 - Pvt1 oncogene
	GTPBP6 Gene (Entity type)	ENSG00000292358 - GTP binding protein 6
	OIP5-AS1 Gene (Entity type)	ENSG00000247556 - OIP5 antisense RNA 1
	DUXAP8 Gene (Entity type)	ENSG00000206195 - double homeobox A pseudogene 8
	C19orf48P Gene (Entity type)	ENSG00000293495 - multidrug resistance-related protein
	CISD3 Gene (Entity type)	ENSG00000277972 - CDGSH iron sulfur domain 3
	SNHG15 Gene (Entity type)	ENSG00000232956 - small nucleolar RNA host gene 15
	LOC389906 Gene (Entity type)	ENSG00000285756 - zinc finger protein 839 pseudogene

MRPS18B

Gene (Entity type)

ENSG00000204568 - mitochondrial ribosomal protein S18B

DANCR

Gene (Entity type)

ENSG00000226950 - differentiation antagonizing non-protein coding RNA

PVT1

Gene (Entity type)

ENSG00000249859 - Pvt1 oncogene

GTPBP6

Gene (Entity type)

ENSG00000292358 - GTP binding protein 6

OIP5-AS1

Gene (Entity type)

ENSG00000247556 - OIP5 antisense RNA 1

DUXAP8

Gene (Entity type)

ENSG00000206195 - double homeobox A pseudogene 8

C19orf48P

Gene (Entity type)

ENSG00000293495 - multidrug resistance-related protein

CISD3

Gene (Entity type)

ENSG00000277972 - CDGSH iron sulfur domain 3

SNHG15

Gene (Entity type)

ENSG00000232956 - small nucleolar RNA host gene 15

LOC389906

Gene (Entity type)

ENSG00000285756 - zinc finger protein 839 pseudogene

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

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Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.