GSE130482 TGM2 knockdown SW480 HCT 116 2 v 4 human dn (Gene Set)

Dcc Asset:

rummageo gene perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE130482_TGM2 knockdown_SW480_HCT 116_2_v_4_human_dn.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE130482_TGM2 knockdown_SW480_HCT 116_2_v_4_human_dn.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE130482_TGM2 knockdown_SW480_HCT 116_2_v_4_human_dn.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE130482_TGM2 knockdown_SW480_HCT 116_2_v_4_human_dn.

Results found

Linked to

	Label	Description
	GGNBP2 Gene (Entity type)	ENSG00000278311 - gametogenetin binding protein 2
	NORAD Gene (Entity type)	ENSG00000260032 - non-coding RNA activated by DNA damage
	OIP5-AS1 Gene (Entity type)	ENSG00000247556 - OIP5 antisense RNA 1
	CISD3 Gene (Entity type)	ENSG00000277972 - CDGSH iron sulfur domain 3
	LINC00667 Gene (Entity type)	ENSG00000263753 - long intergenic non-protein coding RNA 667
	FER1L4 Gene (Entity type)	ENSG00000088340 - fer-1 like family member 4 (pseudogene)
	AFAP1-AS1 Gene (Entity type)	ENSG00000272620 - AFAP1 antisense RNA 1
	FLJ32255 Gene (Entity type)	ENSG00000177738 - uncharacterized LOC643977
	HOXA11-AS Gene (Entity type)	ENSG00000240990 - HOXA11 antisense RNA
	HOXB-AS3 Gene (Entity type)	ENSG00000233101 - HOXB cluster antisense RNA 3

GGNBP2

Gene (Entity type)

ENSG00000278311 - gametogenetin binding protein 2

NORAD

Gene (Entity type)

ENSG00000260032 - non-coding RNA activated by DNA damage

OIP5-AS1

Gene (Entity type)

ENSG00000247556 - OIP5 antisense RNA 1

CISD3

Gene (Entity type)

ENSG00000277972 - CDGSH iron sulfur domain 3

LINC00667

Gene (Entity type)

ENSG00000263753 - long intergenic non-protein coding RNA 667

FER1L4

Gene (Entity type)

ENSG00000088340 - fer-1 like family member 4 (pseudogene)

AFAP1-AS1

Gene (Entity type)

ENSG00000272620 - AFAP1 antisense RNA 1

FLJ32255

Gene (Entity type)

ENSG00000177738 - uncharacterized LOC643977

HOXA11-AS

Gene (Entity type)

ENSG00000240990 - HOXA11 antisense RNA

HOXB-AS3

Gene (Entity type)

ENSG00000233101 - HOXB cluster antisense RNA 3

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.