GSE52133 LIN-41 knockdown 0 v 2 human up (Gene Set)

Dcc Asset:

rummageo gene perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE52133_LIN-41 knockdown_0_v_2_human_up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE52133_LIN-41 knockdown_0_v_2_human_up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE52133_LIN-41 knockdown_0_v_2_human_up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE52133_LIN-41 knockdown_0_v_2_human_up.

Results found

Linked to

	Label	Description
	H4C15 Gene (Entity type)	ENSG00000270276 - H4 clustered histone 15
	H3-3A Gene (Entity type)	ENSG00000163041 - H3.3 histone A
	NORAD Gene (Entity type)	ENSG00000260032 - non-coding RNA activated by DNA damage
	LINC00665 Gene (Entity type)	ENSG00000232677 - long intergenic non-protein coding RNA 665
	PURPL Gene (Entity type)	ENSG00000250337 - p53 upregulated regulator of p53 levels
	LINC00667 Gene (Entity type)	ENSG00000263753 - long intergenic non-protein coding RNA 667
	USP2-AS1 Gene (Entity type)	ENSG00000245248 - USP2 antisense RNA 1
	LOC339260 Gene (Entity type)	ENSG00000233098 - uncharacterized LOC339260
	ESRG Gene (Entity type)	ENSG00000265992 - embryonic stem cell related
	ZNF528-AS1 Gene (Entity type)	ENSG00000269834 - ZNF528 antisense RNA 1

H4C15

Gene (Entity type)

ENSG00000270276 - H4 clustered histone 15

H3-3A

Gene (Entity type)

ENSG00000163041 - H3.3 histone A

NORAD

Gene (Entity type)

ENSG00000260032 - non-coding RNA activated by DNA damage

LINC00665

Gene (Entity type)

ENSG00000232677 - long intergenic non-protein coding RNA 665

PURPL

Gene (Entity type)

ENSG00000250337 - p53 upregulated regulator of p53 levels

LINC00667

Gene (Entity type)

ENSG00000263753 - long intergenic non-protein coding RNA 667

USP2-AS1

Gene (Entity type)

ENSG00000245248 - USP2 antisense RNA 1

LOC339260

Gene (Entity type)

ENSG00000233098 - uncharacterized LOC339260

ESRG

Gene (Entity type)

ENSG00000265992 - embryonic stem cell related

ZNF528-AS1

Gene (Entity type)

ENSG00000269834 - ZNF528 antisense RNA 1

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.