GSE139540 menadione 4 v 1 human dn (Gene Set)

Dcc Asset:

rummageo chemical perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE139540_menadione_4_v_1_human_dn.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE139540_menadione_4_v_1_human_dn.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE139540_menadione_4_v_1_human_dn.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE139540_menadione_4_v_1_human_dn.

Results found

Linked to

	Label	Description
	SNHG29 Gene (Entity type)	ENSG00000175061 - small nucleolar RNA host gene 29
	PVT1 Gene (Entity type)	ENSG00000249859 - Pvt1 oncogene
	NORAD Gene (Entity type)	ENSG00000260032 - non-coding RNA activated by DNA damage
	ZFAS1 Gene (Entity type)	ENSG00000177410 - ZNFX1 antisense RNA 1
	MTCO2P12 Gene (Entity type)	ENSG00000229344 - MT-CO2 pseudogene 12
	UCA1 Gene (Entity type)	ENSG00000214049 - urothelial cancer associated 1
	LOC645485 Gene (Entity type)	ENSG00000285517 - uncharacterized LOC645485
	ABCF2-H2BK1 Gene (Entity type)	ENSG00000285292 - ABCF2-H2BK1 readthrough
	C10orf95-AS1 Gene (Entity type)	ENSG00000269609 - C10orf95 antisense RNA 1
	LINC00467 Gene (Entity type)	ENSG00000153363 - long intergenic non-protein coding RNA 467

SNHG29

Gene (Entity type)

ENSG00000175061 - small nucleolar RNA host gene 29

PVT1

Gene (Entity type)

ENSG00000249859 - Pvt1 oncogene

NORAD

Gene (Entity type)

ENSG00000260032 - non-coding RNA activated by DNA damage

ZFAS1

Gene (Entity type)

ENSG00000177410 - ZNFX1 antisense RNA 1

MTCO2P12

Gene (Entity type)

ENSG00000229344 - MT-CO2 pseudogene 12

UCA1

Gene (Entity type)

ENSG00000214049 - urothelial cancer associated 1

LOC645485

Gene (Entity type)

ENSG00000285517 - uncharacterized LOC645485

ABCF2-H2BK1

Gene (Entity type)

ENSG00000285292 - ABCF2-H2BK1 readthrough

C10orf95-AS1

Gene (Entity type)

ENSG00000269609 - C10orf95 antisense RNA 1

LINC00467

Gene (Entity type)

ENSG00000153363 - long intergenic non-protein coding RNA 467

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.